Anne Daphne Yoder
Professor of Biology
My work integrates field inventory activities with molecular phylogenetic techniques and geospatial analysis to investigate Madagascar, an area of the world that is biologically complex, poorly understood, and urgently threatened. Madagascar has been designated as one of the most critical geographic priorities for conservation action, retaining less than 10% of the natural habitats that existed before human colonization. It is critical that information be obtained as quickly as possible to document the biota that occurs in the remaining and highly threatened forested areas of western Madagascar, to gain an understanding of the evolutionary processes and associated distributional patterns that have shaped this diversity, and to use this information to help set conservation priorities. Phylogenetic and biogeographic analysis of Malagasy vertebrates, each with unique life-history and dispersal characteristics, are conducted to identify areas of high endemism potentially associated with underlying geological features, and also to test for the role that geographic features have played in generating patterns of vertebrate diversity and distribution. My lab also has a significant focus on capacity-building through the education and training of both American and Malagasy students. Research opportunities for American graduate students are enhanced by the formation of Malagasy/American partnerships.
Collaborative Research: Testing the role of historical geology and rivers for shaping the distribution of land vertebrate biodiversity in western Madagascar. National Science Foundation - Environmental Biology. December 2009
REU Supplement for Collaborative Research: Testing the Role of Historical Geology and Rivers for Shaping the Distribution of Land Vertebrate Biodiversity in Western Madagascar. National Science Foundation – Environmental Biology. December 2009
U.S.-Mauritius Doctoral Dissertation Enhancement Project: Baker's Rule and Mating System Evolution in Madagascan CoffeaRubiaceae). (with Mike Nowak). National Science Foundation – International Programs. January 2009
Bioinformatics Postdoctoral Research Fellowship: Integrating species distribution models, Geographic Information Systems and coalescent phylogenetic methods into phylogeography studies. (with Jason Br. National Science Foundation-Division of Biological Infrastructure. 2009
CSBR Living Stocks: Continued Support of the Duke Lemur Center for the Study of Primate Biology and History awarded by National Science Foundation (Principal Investigator). 2016 to 2018
Conference: 50 Years of Interdisciplinary Research at the Duke Lemur Center: the power of biological infrastructure to advance knowledge awarded by National Science Foundation (Principal Investigator). 2016 to 2017
Collaborative Research: Species tree reconstruction using neutral and non-neutral phylogenomic data awarded by National Science Foundation (Principal Investigator). 2014 to 2017
DLC SAVA Conservation: protecting forest corridors awarded by Conservation, Food & Health Foundation (Co-Principal Investigator). 2016 to 2017
Doctoral Dissertation Research: Gene Expression and Physiologic Extremes in Primate Hibernation awarded by National Science Foundation (Principal Investigator). 2015 to 2017
Doctoral Dissertation Research: Gut Instincts: Microbial Community Assembly After Birth and Disease in Captive Lemur Spe awarded by National Science Foundation (Principal Investigator). 2015 to 2017
Continued support of the Duke Lemur Center awarded by National Science Foundation (Principal Investigator). 2011 to 2016
Duke Lemur Center Video Project awarded by Duke Endowment (Principal Investigator). 2015 to 2016
Developing statistical expertise for estimating the temporal origins of Primates awarded by Burroughs Wellcome Fund (Principal Investigator). 2014
Continued Support of the Duke University Primate Center for the Study of Primate Biology and History awarded by National Science Foundation (Principal Investigator). 2006 to 2011
Yoder, AD, and Heckman, K. "Mouse lemur phylogeography revises a model of ecogeographic constraint in Madagascar." Primate Biogeography: Progress and Prospects. Ed. J Fleagle and SM Lehman. Kluwer Press, 2006. 255-268. (Chapter)
Yoder, AD, Olson, LE, Hanley, C, Heckman, KL, Rasoloarison, R, Russell, AL, Ranivo, J, Soarimalala, V, Praveen Karanth, K, Raselimanana, AP, and Goodman, SM. "A multidimensional approach for detecting species patterns in malagasy vertebrates." Systematics and the Origin of Species: On Ernst Mayr's 100th Anniversary. October 28, 2005. 203-228. Full Text
Yoder, AD, and Flynn, JJ. "Origin of Malagasy Carnivora." The Natural History of Madagascar. Ed. SM Goodman and J Benstead. University of Chicago Press, 2003. 1253-1256. (Chapter)
Yoder, AD. "Phylogeny of the lemurs." The Natural History of Madagascar. Ed. SM Goodman and J Benstead. University of Chicago Press, 2003. 1242-1247. (Chapter)
Yoder, AD. "The phylogenetic position of genus Tarsius: whose side are you on?." Tarsiers: Past, Present, and Future. Ed. PC Wright, EL Simons, and S Gursjy. Rutgers Universioty Press, 2003. 161-175. (Chapter)
Yoder, AD, and Delefosse, T. "Ancient DNA." Yearbook of Science and Technology. McGraw-Hill, 2002. 9-14. (Chapter)
Yoder, AD, Rakotosamimanana, B, and Parsons, TJ. "Ancient DNA in subfossil lemurs: methodological challenges and their solutions." New Directions in Lemur Studies. Ed. HB Rasaminanana, S Rakotosamimanana, S Goodman, and J Ganshorn. Plenumn Press, 1999. 1-17. (Chapter)
Yoder, AD. "The use of phylogeny for reconstructing lemuriform biogeography." Biogeographie de Madagascar. Ed. WR Lourenco. Paris: Editions de l’ORSTROM, 1996. 245-258. (Chapter)
Yoder, AD, Weisrock, DW, Rasolorison, RM, and Kappeler, PM. "Cheirogaleid diversity and evolution: big questions about small primates (In preparation)." . Evolutionary Biology and Ecology of the Cheirogaleidae. Ed. SL Lehman, L Radespiel, and E Zimmermann. Cambridge: Cambridge University Press. (Chapter)
Larsen, PA, Lutz, MW, Hunnicutt, KE, Mihovilovic, M, Saunders, AM, Yoder, AD, and Roses, AD. "The Alu neurodegeneration hypothesis: A primate-specific mechanism for neuronal transcription noise, mitochondrial dysfunction, and manifestation of neurodegenerative disease." Alzheimer's & dementia : the journal of the Alzheimer's Association (February 24, 2017). Full Text Open Access Copy
Nunziata, SO, Wallenhorst, P, Barrett, MA, Junge, RE, Yoder, AD, and Weisrock, DW. "Population and Conservation Genetics in an Endangered Lemur, Indri indri, Across Three Forest Reserves in Madagascar." International Journal of Primatology 37.6 (December 2016): 688-702. Full Text
Yoder, AD, Campbell, CR, Blanco, MB, Dos Reis, M, Ganzhorn, JU, Goodman, SM, Hunnicutt, KE, Larsen, PA, Kappeler, PM, Rasoloarison, RM, Ralison, JM, Swofford, DL, and Weisrock, DW. "Geogenetic patterns in mouse lemurs (genus Microcebus) reveal the ghosts of Madagascar's forests past." Proceedings of the National Academy of Sciences of the United States of America 113.29 (July 18, 2016): 8049-8056. Full Text
Hotaling, S, Foley, ME, Lawrence, NM, Bocanegra, J, Blanco, MB, Rasoloarison, R, Kappeler, PM, Barrett, MA, Yoder, AD, and Weisrock, DW. "Species discovery and validation in a cryptic radiation of endangered primates: coalescent-based species delimitation in Madagascar's mouse lemurs." Molecular ecology 25.9 (May 2016): 2029-2045. Full Text
Federman, S, Dornburg, A, Daly, DC, Downie, A, Perry, GH, Yoder, AD, Sargis, EJ, Richard, AF, Donoghue, MJ, and Baden, AL. "Implications of lemuriform extinctions for the Malagasy flora." Proceedings of the National Academy of Sciences of the United States of America 113.18 (May 2016): 5041-5046. Full Text
Larsen, PA, Hayes, CE, Williams, CV, Junge, RE, Razafindramanana, J, Mass, V, Rakotondrainibe, H, and Yoder, AD. "Blood transcriptomes reveal novel parasitic zoonoses circulating in Madagascar's lemurs." Biology letters 12.1 (January 2016): 20150829-. Full Text
Faherty, SL, Villanueva-Cañas, JL, Klopfer, PH, Albà, MM, and Yoder, AD. "Gene Expression Profiling in the Hibernating Primate, Cheirogaleus Medius." Genome biology and evolution 8.8 (January 2016): 2413-2426. Full Text
Pabijan, M, Brown, JL, Chan, LM, Rakotondravony, HA, Raselimanana, AP, Yoder, AD, Glaw, F, and Vences, M. "Phylogeography of the arid-adapted Malagasy bullfrog, Laliostoma labrosum, influenced by past connectivity and habitat stability." Molecular phylogenetics and evolution 92 (November 2015): 11-24. Full Text
Copenhaver, GP, and Barsh, GS. "A Decad(e) of Reasons to Contribute to a PLOS Community-Run Journal." PLOS Genetics 11.10 (October 5, 2015): e1005557-e1005557. Full Text Open Access Copy
Blair, C, Campbell, CR, and Yoder, AD. "Assessing the utility of whole genome amplified DNA for next-generation molecular ecology." Molecular ecology resources 15.5 (September 2015): 1079-1090. Full Text
Perry, G, Kistler, L, Godfrey, LR, Crowley, BE, Muldoon, KM, Malhi, R, Schuster, S, Miller, W, Yoder, AD, and Louis, EE. "Nuclear genome sequences from the extinct subfossil lemurs Palaeopropithecus ingens and Megaladapis edwardsi." March 2015.
Zehr, SM, Taylor, JP, Roach, RG, Haring, D, Cameron, FH, Dean, M, and Yoder, AD. "Prosimian primate life history profiles generated from the new Duke Lemur Center Database (coming soon to a URL near you!)." March 2014.
Mckenney, EA, Rodrigo, A, and Yoder, AD. "Species-specific assembly of the gut microbiota in lemurs." 2014.
Faherty, SL, and Yoder, AD. "Assessing gene expression profiles during seasonal thermoregulation in a hibernating primate, Cheirogaleus medius." April 2012.
Heilman, AM, Chan, LM, Rakotomalala, Z, Goodman, SM, and Yoder, AD. "A multilocus phylogeographic study of a rodent (Eliurus myoxinus) distributed throughout western Madagascar." March 2011.